During December 2012, Servers and Software may be unavailable as we migrate to Amazon Web Services and public code repositories.
- GeneDesign Design of synthetic genes
- HistoneDB Histone Mutation Database
- Synthetic yeast Homepage for the Sc2.0 Synthetic Yeast project
- HAC Hierarchical Agglomerative Clustering for a large-scale network data.
Servers and software (in migration)
- Capture/recapture server Bayesian estimates of false-positive and false-negative rates for two-hybrid protein interaction screens
- Flynet Local searches of the Drosophila protein interaction network
- Time-vs-Money Server Optimize your time-vs-money for genome synthesis. See the course notes, Build-a-Genome time and money.
- CloneQC Sequence verification for synthetic biology, with BSD-licensed source code cloneqc.pl and Table.pm (save with indicated filenames; sample input available from server)
- GWiS Gene-Wide Significance (GWiS): a new gene-based test of association. current release
- HapZipper Compression Scheme for HapMap Phase III Phased Data
- Download NeMo the Network Module identification plugin for cytoscape.
- CloneStudio: Visualization for synthetic biology quality control